PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_127.25
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 355aa    MW: 38836.7 Da    PI: 8.6482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_127.25genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30196255159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dgy+WrKYGqK+ ++++ pr+Y++C++a gCpvkkkv+rsaedp++++ tYegeHnh+
  evm.model.supercontig_127.25 196 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApGCPVKKKVQRSAEDPSILIATYEGEHNHP 255
                                   58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-31186257IPR003657WRKY domain
SuperFamilySSF1182901.7E-26191257IPR003657WRKY domain
PROSITE profilePS5081129.126191257IPR003657WRKY domain
SMARTSM007742.6E-36196256IPR003657WRKY domain
PfamPF031061.8E-25197255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDSTFVDTTL DLNINPFYST NKVQVPKKMD LLRSFADSEK KSSVTEETDV LVEELNRISN  60
ENKKLTEMLV AVCDNYTDLH NRFVELVNKN AGEKEQIATS RKRKADSSTT EDYCSGHIAN  120
NAVVNGGVSA GQTESSLSDE DQSFKHPKEH HKSQSSRVCV RTSASDTSLV SSKFLIKNRV  180
PAASFCVLTR SCLQVVKDGY QWRKYGQKVT RDNPSPRAYF KCSFAPGCPV KKKVQRSAED  240
PSILIATYEG EHNHPIPSRA ELSLTPSRGA AVAGSSAMRP TASGAVTLNL IQSSTLVPGE  300
EERQVEEKKA AGIQQVLVQQ MASSLTRDPN FRAALAAAIS GKFLGQTPMA KWEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23182258378Probable WRKY transcription factor 4
2ayd_A2e-23187257574WRKY transcription factor 1
2lex_A2e-23182258378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011727.11e-101WRKY transcription factor, putative
TrEMBLA0A061GIH61e-101A0A061GIH6_THECC; WRKY transcription factor, putative
STRINGPOPTR_0018s02470.11e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.25e-75WRKY DNA-binding protein 18